FastQCFastQC Report
Sun 12 May 2024
EGAF00004683696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004683696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76686410
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA1017710.13271060674244628No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA854950.11148650719208268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)