FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004683974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004683974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1201974
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25410.21140224330975543No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTTGCG1750.003657165420.716239
TCTGTCG12851.0889355E-47.3347083
AGTCTCG14951.2039258E-57.27492959
CTGTCGC13451.9108251E-47.0075094
TCGCTCT16353.0173874E-46.2085349
TGTCGCC14300.00290164476.08398065
GTCGCCC14500.00338889036.0000646
GAGTCTC27854.4464832E-75.72764738
TCTCGCT16800.00280303045.61064537
Produced by FastQC (version 0.11.5)