EGAF00004684170 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004684170
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27972563
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	1026814	3.670789837885073	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	207143	0.7405220608494116	TruSeq Adapter, Index 18 (97% over 40bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51634	0.1845880193388071	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT	38305	0.1369377557573112	TruSeq Adapter, Index 18 (97% over 40bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	36607	0.13086752186419243	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	33710	62.383995	45
TATGCCG	33785	62.08576	48
ACGTCCG	34175	61.985935	32
CGTATGC	34015	61.92806	46
GATCGGA	33385	61.71477	1
CTCGTAT	33335	61.634666	44
ATCGGAA	35235	60.464417	2
ACACGTC	35335	60.261646	13
AGTCACG	35645	59.826168	28
CGTCCGC	35425	59.593742	33
GTCCGCA	35390	59.57491	34
CGCACAT	33980	59.52453	37
TCTCGTA	34005	59.437626	43
ATGCCGT	35510	59.03248	49
GTCACGT	36305	58.74792	29
ATCTCGT	34050	58.23574	42
ACGTCTG	36725	58.018654	15
TCACGTC	36965	57.511974	30
CACGTCT	37425	56.896336	14
CCGCACA	36200	56.843075	36