Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004684176 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25326249 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 54930 | 0.21688959940337002 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 3175 | 0.0 | 26.389788 | 46 |
TCGTATG | 3115 | 0.0 | 26.336346 | 43 |
CGTATGC | 3200 | 0.0 | 25.963602 | 44 |
CTCGTAT | 3330 | 0.0 | 22.756395 | 42 |
GATCGGA | 3735 | 0.0 | 21.221573 | 1 |
CGCGCTA | 2100 | 0.0 | 18.707758 | 46 |
ATCGGAA | 4700 | 0.0 | 17.822735 | 2 |
ACACGTC | 5135 | 0.0 | 17.118202 | 13 |
ATGCCGT | 5005 | 0.0 | 16.810837 | 47 |
TCTCGTA | 4955 | 0.0 | 15.433218 | 41 |
ACGTCTG | 5910 | 0.0 | 15.284979 | 15 |
GCCGTCT | 5890 | 0.0 | 13.931668 | 49 |
AATCTCG | 5605 | 0.0 | 13.704446 | 39 |
CGTCTGA | 6680 | 0.0 | 13.471075 | 16 |
ATCTCGT | 5785 | 0.0 | 13.398832 | 40 |
GCATTCG | 3495 | 0.0 | 13.226083 | 3 |
CACGTCT | 6810 | 0.0 | 13.060861 | 14 |
CCGTCTT | 6345 | 0.0 | 13.042872 | 50 |
TCGGAAG | 6880 | 0.0 | 12.831342 | 3 |
TGCCGTC | 6905 | 0.0 | 12.437296 | 48 |