EGAF00004684195 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004684195
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14159095
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC	106608	0.7529294774842601	TruSeq Adapter, Index 9 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76507	0.5403382066438568	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	39023	0.27560377269874947	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12835	62.075577	1
TCGTATG	13140	61.106125	43
CTCGTAT	13295	59.999462	42
ATCGGAA	13400	59.760544	2
CGTATGC	13590	59.08441	44
TATGCCG	13725	58.53191	46
GTCACGA	13960	57.42091	29
ACACGTC	14255	56.842453	13
AGTCACG	14360	55.943077	28
ACGATCA	14455	55.55431	32
TCTCGTA	14390	55.43285	41
AAAAGGG	21270	55.36973	70
TCACGAT	14695	54.597164	30
ACGTCTG	14775	54.348022	15
TCGGAAG	14910	53.941162	3
CACGATC	14930	53.62271	31
ATGCCGT	15125	53.321396	47
ATCTCGT	15030	53.117203	40
CGATCAG	15170	52.983047	33
CACGTCT	15340	52.482258	14