FastQCFastQC Report
Fri 3 May 2024
EGAF00004684217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63151638
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length63-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2342390.3709151613771285No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG1757430.2782873185332105No Hit
TCTCCCACTAGATCCTGTATTATCCATCTACATCAGAACCAAACTACTTC1257030.19904946883563018No Hit
TGCCGTCTACAGGGATGACCTGAAGAAATTGCTAGAGACCGAGTGTCCTC727280.11516407539579575No Hit
TCTGCAGGTGAATCTTCAATAAAATGCTTTTGTCATTCAAAAAAAAAAAA667240.10565680022424755No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG657560.10412398170891465No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG653510.10348266817718962No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)