FastQCFastQC Report
Thu 2 May 2024
EGAF00004684225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48949867
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length60-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1112210.22721410050000745No Hit
CTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAG682350.13939772298053435No Hit
CCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTA524750.10720151701331486No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)