FastQCFastQC Report
Fri 10 May 2024
EGAF00004684226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49849680
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC28

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1524840.30588762054239865No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1145530.22979686128376348No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)