FastQCFastQC Report
Fri 3 May 2024
EGAF00004684228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55228610
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length55-76
%GC29

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2083060.3771704556750568No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1093340.1979662352537933No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)