FastQCFastQC Report
Sat 4 May 2024
EGAF00004684229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55228610
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG2191380.3967834787078654No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG956870.17325621629803828No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG944110.17094581956706859No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG740090.13400482105198736No Hit
CTGTCCTACCAATAACGTAGAATAAAAACATAACCCACTGAAAAAAAAAA693310.12553457347559535No Hit
GCTCCTATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG654820.11856535951203552No Hit
GCCCACTTTAGATGTATCTAATTCTCCTGACTGTTCTTCCCAGGGGAGTG651450.11795516852587816No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG633370.11468150293842269No Hit
GCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCC600570.10874255209392379No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG555150.10051855369888904No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)