FastQCFastQC Report
Mon 13 May 2024
EGAF00004684231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110843034
Total Bases7.5 Gbp
Sequences flagged as poor quality0
Sequence length26-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6826310.615853766687765No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG2132560.192394589271167No Hit
TCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTC1463830.13206332840005083No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1351470.12192647126566385No Hit
TCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACA1237890.11167954857677388No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)