FastQCFastQC Report
Thu 2 May 2024
EGAF00004684233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40147509
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length57-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2079860.5180545572578363No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG1861330.46362278665906764No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG863480.21507685570230523No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG745460.18568026225487613No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG721430.17969483486509713No Hit
TCTCCCACTAGATCCTGTATTATCCATCTACATCAGAACCAAACTACTTC572340.14255928057703404No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG562950.14022040570437383No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG510130.12706392319384No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG487410.1214047925115354No Hit
CCCAGGCAGTATCCATGAAAGCACAAGTGACTAGTCCTATGATGTACAAA472560.11770593288863823No Hit
CCTCTAATGCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATC435880.10856962507935423No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG403370.10047198694195449No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)