FastQCFastQC Report
Wed 11 May 2022
EGAF00004684233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40147509
Sequences flagged as poor quality0
Sequence length57-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2065990.5145997974619048No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG1860870.46350820918926755No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG863260.215022057781966No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG745300.18564040922190217No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG721220.17964252775931877No Hit
TCTCCCACTAGATCCTGTATTATCCATCTACATCAGAACCAAACTACTTC569160.1417672015466763No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG562890.1402054608170086No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG481590.11995513843710702No Hit
CCCAGGCAGTATCCATGAAAGCACAAGTGACTAGTCCTATGATGTACAAA472340.11765113496829903No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG459480.1144479474430157No Hit
CCTCTAATGCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATC435410.10845255679499319No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG403290.1004520604254675No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)