FastQCFastQC Report
Sun 5 May 2024
EGAF00004684235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59818872
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length62-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1181770.19755805492286785No Hit
CTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAG1018760.17030745748599205No Hit
CCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTA798110.13342110496500167No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC795390.13296639896519613No Hit
CCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC673860.11265006802535493No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)