FastQCFastQC Report
Thu 2 May 2024
EGAF00004684237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62431961
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length62-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3443210.5515139913673384No Hit
GCCCACTTTAGATGTATCTAATTCTCCTGACTGTTCTTCCCAGGGGAGTG3141810.50323743635091No Hit
GGGGAGTGTGGAGGTCTTGGCCCTGTTCCCTGTCCTACCAATAACGTAGA1469550.23538424493826168No Hit
TCCGCCAGTACTTTACCGTCTTCGACAGGGCAAACAACCAGGTCGGCCTG1307200.2093799360234736No Hit
GCCAGTACTTTACCGTCTTCGACAGGGCAAACAACCAGGTCGGCCTGGCC1194880.19138915082292546No Hit
GTGCCCACTTTAGATGTATCTAATTCTCCTGACTGTTCTTCCCAGGGGAG1170210.18743764912333924No Hit
TCCGTTTGTTTTTCCAAAATACTTTATTCTCTCATACATAGTATTTTCAT1101460.176425661209008No Hit
GCCTTCTTTTTCTGGACTCTGGACTTTCTCTAATAATAAATAGTTCTTCT815940.13069267518282823No Hit
GGGCATGAACCTCCCCACCGAATCTGGAGAGCTTTGGATCCTGGGTGATG763300.1222610963637679No Hit
GGGGGGTGTGGAGGTCTTGGCCCTGTTCCCTGTCCTACCAATAACGTAGA761800.1220208348092734No Hit
CTCTGGATTCAGCCTTCTTTTTCTGGACTCTGGACTTTCTCTAATAATAA643830.10312506442012931No Hit
ACCGTCTTCGACAGGGCAAACAACCAGGTCGGCCTGGCCCCCGTGGCTTA641760.10279350347492688No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)