FastQCFastQC Report
Thu 2 May 2024
EGAF00004684239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52644030
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length61-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3352550.6368338442174735No Hit
CTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAG669390.12715401917368407No Hit
CCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTA556660.10574038499712123No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)