FastQCFastQC Report
Sun 5 May 2024
EGAF00004684241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004684241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43682049
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length60-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG946010.21656722192679193No Hit
CTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAG698500.15990550260130884No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC665890.15244019345337945No Hit
CCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTA561950.1286455220999363No Hit
CCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC453340.1037817617026161No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)