EGAF00004684361 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004684361
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18122454
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	327195	1.8054674052421376	TruSeq Adapter, Index 12 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	34390	44.277405	1
ATCGGAA	34715	43.87745	2
TCGGAAG	34740	43.792667	3
CTCGTAT	33690	43.77944	42
TCTCGTA	33835	43.575237	41
CGTATGC	34005	43.57127	44
ACACGTC	34830	43.55972	13
TCGTATG	34150	43.387222	43
CGTCTGA	34990	43.344833	16
ACGTCTG	35070	43.283367	15
ATCTCGT	34115	43.204395	40
CACGTCT	35205	43.051	14
CGGAAGA	35555	42.769855	4
GTATGCC	34775	42.65381	45
CACACGT	36060	42.130043	12
GCACACG	36055	42.12965	11
AATCTCG	35270	41.87253	39
AGTCACC	36965	40.233307	28
GTCACCT	37185	40.03334	29
AGAGCAC	38025	40.025047	8