FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004685199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004685199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1067413
Sequences flagged as poor quality0
Sequence length18-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39620.37117779153898256No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGGTGAGGAAGATGCTGGCAAAGGATGG35050.32836399781527864No Hit
GTACAGGGGACTGGCCTGGCCTCTGCTGATACCAGCAAGCAGATTTATGCCCCAGTTTATCTCCAGAGCAGTT31030.29070284885044495No Hit
CCCCTGTACTGATCATCTATGAACATGTCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAAATCTG29860.2797417681815754No Hit
GTAATAAATAGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACAGTGACTTCTTGGTGTTGTCTCTGGA26550.24873221517819252No Hit
GTATATGTTAGTACTACTACTGGTAATACATGAAAGCCATTCCAGCCCCTTCCCTGGAGCCTGGCGGACCCAATT26300.24639010392416058No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGT23640.22147004018126065No Hit
AACATATACTATGCAGACTCTGTGAAGGGCCGATTCACCGTCTCCAGAGACAACACCAAGAAGTCACTGTATCT22290.20882263940948817No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA21610.2024520967985213No Hit
CCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACA21210.19870471879207016No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGCTGTGGGCGAAGTACCGGCCTGGGGC20180.18905522042545858No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG20100.18830574482416834No Hit
GGATTTGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCAA19200.17987414430965334No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAAAACAGC18480.17312886389804133No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT18430.17266044164723496No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGTGAAAACCCACACCAACATCTCCGA17340.16244883657965567No Hit
ATTTATTACTGTGTGAGAGATGGGGGGGGTTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTC16490.15448565831594707No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGGGTCAGTAGCAGGTGCCAGCTGTGTC15860.14858353795578655No Hit
GTCCTGAGAGGGGGCAAGTACGCAGCCACCTCACAGGTGCTGCTGCCTTCCAAGGACGTCATGCAGGGCACAGAC15240.14277510204578733No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAAAACAGCCGTGCCGCTGTCCCACGCCTGACAATAATATTCA14890.13949614629014262No Hit
GTATGTGACCAGCGCCCCAATGCCTGAGCCCCAGGCCCCAGGCCGGTACTTCGCCCACAGCATCCTGACCGTGTC14880.13940246183998134No Hit
GCCCTGCACAGGCCCGATGTCTACTTGCTGCCACCAGCCCGGGAGCAGCT14840.13902772403933622No Hit
GGATGGGGGGATGGCGAAGACCCGGATGGCTGTGTCTTGATCGGGGACACACATGGAGGACGCATTCTGCTGGAA14700.13771614173707833No Hit
GAGTTGGGGCTGTGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAACTGGTGGAGT14350.13443718598143362No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTC14110.13218875917756295No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT14010.13125191467595018No Hit
GGCCAGGCCAGTCCCCTGTACTGATCATCTATGAACATGTCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTG13900.1302213857241761No Hit
GTACAGGGTGGGTTTACCGGTGGACTTGTCCACGGTCCTCTCGGTGACCCTGTTGGGCAGGGCCTCATGGGCCAC13900.1302213857241761No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCA13800.12928454122256333No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT13290.12450663426433817No Hit
TCTATGAACATGTCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAAATCTGGGAACACAGCCACT13220.12385084311320922No Hit
CTCCTGTGCAGCCTCTGGATTCAGCTTCAGTAATTATGAAATGAATTGGGTCCGCCAGGCTCCAGGGAAGGG13090.12263294526111261No Hit
GTACTGATCATCTATGAACATGTCAAGCGGCCCTCAGGGATCCCTGAGCG12570.11776135385272617No Hit
CCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCAACTGCTCTGG12560.1176676694025649No Hit
CACATGGAGGACGCATTCTGCTGGAAGGTCAGGCCCCTGTGATCCACGCGGCAGGTGAACATGCTCTGGCTGAGC12490.11701187825143594No Hit
CTCCATGTGTGTCCCCGATCAAGACACAGCCATCCGGGTCTTCGCCATCCCCCCATCCTTTGCCAGCATCTTCCT12410.11626240265014572No Hit
GGTCACATACTTCTCCGGGGACAAGGGCTGCCCCCTCTGCATCCACTGCACGAAGACGTCCGCGGGAGAGAAGCC12180.11410766029643633No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATA12080.11317081579482356No Hit
GCACTGAACACAGAGGACTCACCATGGAGTTGGGGCTGTGCTGGGTTTTC11990.11232765574337206No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC11960.11204660239288822No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACC11630.10895501553756606No Hit
GTGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAACTGGTGGAGTCTGGGGGAGGCTT11620.10886133108740478No Hit
CCTTGTAGGTCGTGGGCCCAGACTCTTTGGCCTCAGCCTGCACCTGGTCC11490.10764343323530817No Hit
GTCCAGCACCCCAACGGCAACAAAGAAAAGAACGTGCCTCTTCCAGTGATTGCTGAGCTGCCTCCCAAAGTGAGC11410.10689395763401795No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCA11320.10605079758256644No Hit
GTACCGGCCTGGGGCCTGGGGCTCAGGCATTGGGGCGCTGGTCACATACTTCTCCGGGGACAAGGGCTGCCCCCT11290.10576974423208263No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAGGCCACTGTCACGGCTC11100.10398973967901833No Hit
GGGTGGGTTTACCGGTGGACTTGTCCACGGTCCTCTCGGTGACCCTGTTG10860.10174131287514768No Hit
GGCCCGATGTCTACTTGCTGCCACCAGCCCGGGAGCAGCTGAACCTGCGG10780.10099183727385744No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAG10720.10042973057288979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)