FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004685237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004685237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences684578
Sequences flagged as poor quality0
Sequence length18-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30290.44246236367513997No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGT16340.23868719123313922No Hit
CCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACA15160.22145029492621734No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG15060.2199895410019019No Hit
CCCCTGTGCTGGTCATCTATCAAGATACCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTG13140.1919430656550459No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATGAGGC13030.19033623633829894No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT12310.1798188080832279No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTC11230.16404266570062143No Hit
GAATGATAGTGAGGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGCATCCCCGACCAGCCC11110.1622897609914429No Hit
GTGCTGTCCCACGCCTGACAGTAATAGTCAGCCTCATCCATAGCCTGGGT10770.15732319764877048No Hit
CCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGG10480.15308701126825577No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT10090.14739007096342566No Hit
CCCTTAGACTCTCCTGTGCAGCCTCTAGATTCACTTTCAAGAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAG10070.14709792017856257No Hit
CTCCTGTGCAGCCTCTAGATTCACTTTCAAGAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGG10070.14709792017856257No Hit
GCACAGGGGACTGGCCTGGCTTCTGCTGATACCAGGAAGCATATTTATCCCCCAATTTATCTCCAGAGCAGGT10040.14665969400126794No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT9940.1451989400769525No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCA9740.14227743222832168No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATA9600.14023237673428007No Hit
CTATTACTGTCAGGCGTGGGACAGCACTGCCTCATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAA9550.13950199977212238No Hit
CTATCATTCTCTGTGGTACAGTAATACACGGCTGTGTCCTCGGTTTTCAG9450.13804124584780697No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATGAGGCAGTGCTGTCCCACGCCTGACAGTAATAGTCAGCCT9450.13804124584780697No Hit
GGACAGCACTGCCTCATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCA9420.13760301967051233No Hit
GGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTC9060.13234430554297685No Hit
CCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGAT9020.13176000397325066No Hit
GACTATTACTGTCAGGCGTGGGACAGCACTGCCTCATTCGGCGGAGGGAC8780.12825419455489367No Hit
GTAATAGTCAGCCTCATCCATAGCCTGGGTCCCGCTGATGGTCAGAGTGGCTGTGTTCCCAGAGTTGGAGCCAGA8540.12474838513653666No Hit
CAGTAATAGTCAGCCTCATCCATAGCCTGGGTCCCGCTGATGGTCAGAGTGGCTGTGTTCCCAGAGTTGGAGCCA8530.12460230974410513No Hit
GTGTGACCTGGAGCGAAAGCGGACAGAACGTGACCGCCAGAAACTTCCCACCTAGCCAGGATGCCTCCGGGGAC8450.12343370660465279No Hit
TCCATAGCCTGGGTCCCGCTGATGGTCAGAGTGGCTGTGTTCCCAGAGTTGGAGCCAGAGAATCGCTCAGG8330.1216808018954743No Hit
GTAATACACGGCTGTGTCCTCGGTTTTCAGGCTGTTCATTTGCAGATACAGCGTGTTTTTTGAATCATCTCTTGA8260.1206582741484535No Hit
GGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCACTGCCTCATTCGGCGGAGGGACCAAGCTGAC8090.1181749924771173No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACC8010.11700638933766497No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAGGCCACTGTCACGGCTC7990.11671423855280187No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCA7830.1143770322738972No Hit
GAGTGGCTGTGTTCCCAGAGTTGGAGCCAGAGAATCGCTCAGGGATCCCTGAGGGCCGCTTGGTATCTTGATA7780.11364665531173951No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC7690.11233197677985562No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAG7650.11174767521012945No Hit
GTTCAAGGACCACCTGAGCGTGACCTCTGTGGCTGCTACAGCGTGTCCAG7630.11145552442526636No Hit
CACCAGTGTGGCCTTGTTGGCTTGAAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGG7510.10970261971608786No Hit
ATCAAGATACCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCT7490.10941046893122477No Hit
GTGCTGGTCATCTATCAAGATACCAAGCGGCCCTCAGGGATCCCTGAGCG7460.10897224275393015No Hit
GCTCAGGCGTCAGGCTCAGATAGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCA7420.10838794118420399No Hit
GGCTCAGATAGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTT7340.10721933804475166No Hit
GTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAG7330.10707326265232012No Hit
GTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGG7330.10707326265232012No Hit
GCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGATCCGTG7310.10678111186745703No Hit
GTCACATCCTGGCTGGGATTCGTGTAGTGCTTCACGTGGCATGTCACGGACTTGCCGTCTGGGCACTGTGTGGCC7260.10605073490529932No Hit
GGATCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCAC7140.10429783019612082No Hit
GTGTACAGGTCCCCGGAGGCATCCTGGCTAGGTGGGAAGTTTCTGGCGGTCACGTTCTGTCCGCTTTCGCTCCAG7070.10327530244910003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)