FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004685423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004685423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574255
Sequences flagged as poor quality0
Sequence length18-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33780.5882404158431359No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT9610.16734725862204072No Hit
GTATCAACGCAGAGTACGGGAATATCAACCCGTTGTCCATCGACTACGCCTGTCGGCCTCGCCTTAGGTCCC9410.16386448528963615No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC7710.1342609119641971No Hit
CTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCACTTAGCACAC6810.11858843196837641No Hit
GACTTACCCAGGGCAGATTAGCTTGACCCTGGAACCCTTAGTCATCCGGCGGACGGGTTTCTCACCCGTCTTTC6230.10848838930440309No Hit
GATCAGTACCGTGAGGGAATGGTGAAAAGTACCCCGGGAGGGGAGTGAAA6220.10831425063778286No Hit
CCCCTACCCATCCAGCAAAACTGAATGCCACGGTTTCGGCGGTGTACTTG6150.10709527997144125No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT6030.1050056159719985No Hit
GGGCAGATTAGCTTGACCCTGGAACCCTTAGTCATCCGGCGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGC5950.10361250663903666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)