EGAF00004686090 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686090
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	898223
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17235	1.9187885413755827	No Hit
CTGTTAGCCTGTTGACAATAGTAGATTGCAAAATCCTCAGGCTGCAGGCTATTGATGGTGAGAGTGAAATCTGTC	2569	0.28600915362888724	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	1447	0.16109585258894507	No Hit
GTAATACACAGCCGTGTCCTCGTCTCTCAGGCTGTTCATTTGCAGATACA	1326	0.1476248103199317	No Hit
GTATCAACGCAGAGTACGGGAAACTGTTAGCCTGTTGACAATAGTAGATT	1158	0.1289212144422933	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1143	0.127251250524647	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1116	0.12424531547288369	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1063	0.11834477629720014	No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG	1038	0.11556150310112298	No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA	980	0.10910430928622401	No Hit
CAATAGTAGATTGCAAAATCCTCAGGCTGCAGGCTATTGATGGTGAGAGTGAAATCTGTCCCAGATCCACTGCCG	966	0.10754567629642081	No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGCTGTGGGCGAAGTACCGGCCTGGGGC	949	0.10565305052308836	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	948	0.10554171959524528	No Hit
GTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGATATTAGCAGCTGGTTAGTCTGGTATCAGCAGAAA	948	0.10554171959524528	No Hit
GAGTGAAATCTGTCCCAGATCCACTGCCGCTGAACCTTGATGGGACCCCA	921	0.10253578454348196	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	485	0.0	42.490902	1
GTATCAA	3230	0.0	38.384186	1
CGCGGTC	50	1.9172434E-4	34.325764	39
TATCAAC	3775	0.0	32.648323	2
ATCAACG	3915	0.0	31.555128	3
AACGCAG	3945	0.0	31.390606	6
TCAACGC	3945	0.0	31.30819	4
CAACGCA	3975	0.0	31.070173	5
CGCAGAG	4260	0.0	29.30327	8
AGAGTAC	4320	0.0	28.889845	11
CAGAGTA	4415	0.0	28.420153	10
GCAGAGT	4435	0.0	28.371576	9
AAGCGGA	50	0.0071755466	28.026958	45
TTAAGAC	60	6.7757134E-4	27.674358	3
ACGCAGA	4565	0.0	27.272715	7
ATAGCGG	90	1.1614768E-4	25.143421	63
CGGGTAT	150	1.6152626E-9	24.360218	17
AATCGTT	100	1.625584E-5	24.028034	39
TTAATCG	100	1.7244789E-5	23.845453	37
GCTTGCG	70	0.0016565943	23.742037	1