EGAF00004686223 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686223
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	403070
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTCGTATGCCGT	1053	0.2612449450467661	No Hit
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC	728	0.18061378916813456	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	568	0.14091845088942367	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	533	0.13223509564095567	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	451	0.11189123477311634	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	443	0.10990646785918078	No Hit
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGT	439	0.10891408440221301	No Hit
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT	437	0.10841789267372914	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	423	0.10494455057434193	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGCGT	20	0.008453935	49.959713	10
CTCTTAT	195	0.0	40.997673	1
AGTATCG	165	0.0	39.099888	34
AGTAGCG	35	0.0014563468	38.805904	34
CTCGTAT	205	0.0	38.707966	39
CGGGTAG	35	0.001597266	38.083443	17
CGTATGC	250	0.0	37.5696	41
GGTATCA	1400	0.0	37.355465	1
GCCGTCT	285	0.0	37.088478	46
ACCGATC	565	0.0	36.767635	27
GTATCAA	3215	0.0	36.57432	1
TATACAC	580	0.0	36.182213	3
CCGTCTT	295	0.0	35.916084	47
TCGTATG	235	0.0	35.384686	40
CAGTATC	530	0.0	35.174213	33
CACGAGA	580	0.0	35.072735	21
TCTCCGA	605	0.0	34.682777	11
GTATCGG	80	7.975359E-8	34.032642	35
ACGAGAC	600	0.0	33.903645	22
ATCTCCG	630	0.0	33.835148	10