EGAF00004686245 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686245
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	786180
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGT	1156	0.14704011803912592	No Hit
GCTCAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGAC	1136	0.14449617136024828	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1064	0.1353379633162889	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	966	0.12287262458978859	No Hit
ATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGTCCACCT	954	0.12134625658246202	No Hit
CATTGACATGGGTGGGTTTACCCGCCAAGCGGTCGATGGTCTTCTGTGTGAAGGCCAGCGGCAGGGCCTCGTGGC	823	0.10468340583581369	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	794	0.10099468315144114	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	430	0.0	49.8607	1
CGTATGC	190	0.0	45.44664	41
TGGTATC	460	0.0	45.12352	2
TCGTATG	195	0.0	44.207134	40
GGTATCA	1725	0.0	43.79758	1
GGTACGG	70	5.0749804E-10	43.75252	3
AGGTACG	70	5.0749804E-10	43.749737	2
CTCGTAT	170	0.0	42.5373	39
ATCTCGT	170	0.0	42.43351	37
CATCTCG	175	0.0	39.21541	36
GTATCAA	4135	0.0	39.17578	1
ATCTCCG	305	0.0	39.04555	10
GTATGCC	245	0.0	35.292183	42
TCTCCGA	330	0.0	35.056484	11
CCCACGA	340	0.0	35.028385	19
TTCCGTA	50	1.9716E-4	34.162292	31
TATACAC	410	0.0	32.369747	3
GCCCACG	370	0.0	32.18824	18
TACACAT	415	0.0	31.15976	5
TATCAAC	5290	0.0	30.811354	2