FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004686253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004686253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences666931
Sequences flagged as poor quality0
Sequence length20-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT27150.407088589374313No Hit
GTATTACTGTCAGCAGTATGGTAGCACAACGGGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAA12180.18262758816129404No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT8540.12804922848090733No Hit
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGT7240.10855695716648348No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC6830.10240939467501137No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC6730.10090998918928645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)