EGAF00004686498 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686498
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	768908
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14570	1.8948950979831136	No Hit
CTGTTAGCCTGTTGACAATAGTAGATTGCAAAATCCTCAGGCTGCAGGCTATTGATGGTGAGAGTGAAATCTGTC	2354	0.30614845989377143	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	1430	0.18597803638406676	No Hit
GTATCAACGCAGAGTACGGGAAACTGTTAGCCTGTTGACAATAGTAGATT	1278	0.16620974160757854	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1210	0.157366030786518	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	941	0.1223813512149698	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	936	0.12173107836048006	No Hit
ATCTCACCCCGTTGACACGGTTAGTTTGCATGCACACACAGAGCGGCCAG	870	0.11314747668121543	No Hit
GTACAACGTGTCCCTGGTCATGTCCGACACAGCTGGCACCTGCTACTGAC	856	0.11132671268864415	No Hit
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT	832	0.10820540298709339	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	560	0.0	48.104042	1
GTATCAA	4405	0.0	35.27532	1
TATCAAC	5180	0.0	29.742025	2
TCACACG	45	0.005845578	29.228004	22
AACGCAG	5320	0.0	29.062021	6
ATCAACG	5365	0.0	28.768303	3
TCAACGC	5390	0.0	28.505598	4
CAACGCA	5450	0.0	28.188107	5
CGCAGAG	5540	0.0	28.026443	8
ATTGTCC	240	0.0	27.510815	64
GCAGAGT	5625	0.0	27.486217	9
AGAGTAC	5655	0.0	27.393105	11
CAGAGTA	5675	0.0	27.240505	10
TCCGAGA	220	5.7960096E-7	27.137346	70
CAAGCCG	70	0.008430641	27.11438	69
ACGCAGA	5725	0.0	26.94877	7
GGTATCA	2735	0.0	26.905832	1
TTTGCCG	55	0.008956884	26.7809	55
GACAGGT	210	0.0	26.594105	1
TAGGAGC	50	0.009850093	26.264133	4