FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004686558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004686558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences302696
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16770.5540211961836298No Hit
GTAATATACGGCCGTGTCGTCGGCTCTCAGGCTGTTCATTTGCAGAAACA9380.3098818616697941No Hit
GTATTACTGTCAGCAATATGTTTACTCACCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAA6300.20812960858419008No Hit
GTATATTACTGTGCGAAACATCACACGATGACTTCGGGCCACTGGTACTT5300.1750931627771758No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG5120.1691466025319132No Hit
CTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGACCTGGGTCCGCCAGGCTCCAGGGAAGGGG4690.15494093083489704No Hit
GGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTT4670.15428020191875677No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT4240.14007453022174063No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA3710.12256521394402305No Hit
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCGGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA3610.1192615693633216No Hit
GTGTATTACTGTCAGCAATATGTTTACTCACCTCCGCTCACTTTCGGCGG3040.10043079525332346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)