EGAF00004686818 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686818
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527649
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3784	0.7171434040432181	No Hit
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT	923	0.1749268926881317	No Hit
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC	809	0.15332162100184024	No Hit
GTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCA	720	0.1364543474923671	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	651	0.12337747252434857	No Hit
CTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCG	636	0.12053467361825759	No Hit
GCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGAC	627	0.118828994274603	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	623	0.11807091456631208	No Hit
GGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCA	607	0.11503859573314837	No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTC	532	0.10082460120269346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAATCGA	40	2.5652784E-5	48.278915	59
ACAATCG	40	2.691373E-5	47.8887	58
TAGCGTG	30	8.5824425E-4	43.212914	9
AATCGAG	50	9.2817245E-5	38.825256	60
CGGTGTA	35	0.0015624219	38.256737	34
TTGCTAA	45	1.0235946E-4	38.186638	39
TCGAGTA	55	1.4868302E-4	35.837948	62
CGATTAC	40	0.00225279	35.50869	45
GCGACTC	50	1.7859862E-4	34.738804	41
GACCGGA	205	3.965397E-10	34.33893	70
GTATCAA	2785	0.0	33.819374	1
AGTACTC	65	2.4676725E-4	32.87645	68
GGTATCA	1255	0.0	32.753506	1
TGCGACT	55	3.204514E-4	31.44629	40
TACTCGT	45	0.0047076563	30.54931	39
GTGTATA	55	4.7308038E-4	29.424232	1
TAGTCGG	45	0.0057865568	29.286991	30
GCCCGTT	45	0.00627732	28.803139	7
GACGTTG	65	5.9101376E-4	28.325256	51
CGCAGAG	3295	0.0	28.032658	8