EGAF00004686921 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004686921
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	919897
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTCAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGAC	2461	0.26752995172285593	No Hit
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGT	2428	0.2639425935729761	No Hit
ATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGTCCACCT	1673	0.18186818741663469	No Hit
GTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGACATGGG	1551	0.1686058330443517	No Hit
CAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGACATG	1514	0.16458364360357736	No Hit
CATTGACATGGGTGGGTTTACCCGCCAAGCGGTCGATGGTCTTCTGTGTGAAGGCCAGCGGCAGGGCCTCGTGGC	1387	0.15077775011767622	No Hit
GTACCTGACTTGGGCATCCCGGCAGGAGCCCAGCCAGGGCACCACCACCT	1380	0.15001679535861082	No Hit
GTGCAGGGAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGATCCTGCAGCTCCAGGCTCC	1234	0.1341454532409607	No Hit
CCAGCATACTGCGCGTGGCAGCCGAGGACTGGAAGAAGGGGGACACCTTCTCCTGCATGGTGGGCCACGAGGCC	1132	0.1230572553231503	No Hit
CTCCTGCATGGTGGGCCACGAGGCCCTGCCGCTGGCCTTCACACAGAAGACCATCGACCGCTTGGCGGGTAAACC	1078	0.11718703289607423	No Hit
ATGGTCTTCTGTGTGAAGGCCAGCGGCAGGGCCTCGTGGCCCACCATGCA	1011	0.10990360877359096	No Hit
GAAGACCATCGACCGCTTGGCGGGTAAACCCACCCATGTCAATGTGTCTGTTGTCATGGCGGAGGTGGACGGCAC	954	0.10370726287834398	No Hit
ATGCAGGAGAAGGTGTCCCCCTTCTTCCAGTCCTCGGCTGCCACGCGCAG	932	0.1013156907784241	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1935	0.0	38.06409	1
CGACCGG	110	8.594263E-6	36.81295	70
CTCGTAT	150	0.0	36.578472	39
GTATCAA	4560	0.0	35.83769	1
CGTATGC	155	0.0	35.765503	41
TCGTATG	160	0.0	34.49176	40
CGATTGT	100	2.1176873E-4	33.745205	70
ACGACCG	85	2.0481588E-5	32.432014	69
CCGTCTT	195	0.0	29.131458	47
ATCAACG	5750	0.0	28.878323	3
TATCAAC	5780	0.0	28.728434	2
TCAACGC	5795	0.0	28.654074	4
CAACGCA	5850	0.0	28.384676	5
AACGCAG	5970	0.0	27.924284	6
ATGCCGT	215	0.0	27.72628	44
ATCTCGT	185	0.0	27.536089	37
TCGTTAA	100	0.008610818	26.996162	70
CGCAGAG	6125	0.0	26.94921	8
TCTCGTA	190	0.0	26.921793	38
ACACGAC	90	7.5857075E-5	26.769176	67