Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004687303 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 851292 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC | 2321 | 0.2726444040352782 | No Hit |
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAATGATGGGAGGGGGTCAGGCTGGAACTGAGGAG | 1921 | 0.22565700135793593 | No Hit |
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA | 1897 | 0.2228377571972954 | No Hit |
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC | 1711 | 0.20098861495233128 | No Hit |
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC | 1701 | 0.1998139298853977 | No Hit |
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT | 1572 | 0.18466049252195488 | No Hit |
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC | 1360 | 0.15975716910296348 | No Hit |
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT | 1337 | 0.1570553934490163 | No Hit |
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG | 1256 | 0.14754044440685452 | No Hit |
ACAGTACCCTGATCACCTTCGCCCAAGGGACACGACTGGAGATTAAACGA | 1250 | 0.1468356333666944 | No Hit |
GGGTACTGTAAGTCTGTTGACAGTAGTAAGTTGCAAAATCTTCAGGTTGCAGACTGCTGATGGTGAGAGTGAAAT | 977 | 0.11476673103940832 | No Hit |
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT | 923 | 0.10842343167796714 | No Hit |
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG | 918 | 0.10783608914450035 | No Hit |
GGTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAA | 906 | 0.10642646706418009 | No Hit |
CCGCAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAATGAT | 875 | 0.10278494335668607 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTGCCG | 35 | 0.0059414534 | 54.6215 | 70 |
TCGTATG | 80 | 3.45608E-11 | 43.21919 | 40 |
ACCGATC | 110 | 0.0 | 39.87861 | 27 |
GTATCAA | 3600 | 0.0 | 38.27878 | 1 |
ATCTCGT | 105 | 1.8189894E-11 | 35.91364 | 37 |
CGTATGC | 100 | 3.619789E-10 | 34.667526 | 41 |
CTACGTA | 40 | 0.002950547 | 33.610638 | 9 |
GCCGTCT | 105 | 5.347829E-10 | 33.419632 | 46 |
TCCGAGA | 135 | 1.3618192E-6 | 33.042633 | 70 |
TATCTCG | 115 | 5.2750693E-11 | 32.7221 | 36 |
ATCAACG | 4500 | 0.0 | 30.624825 | 3 |
TCAACGC | 4515 | 0.0 | 30.52308 | 4 |
CAACGCA | 4635 | 0.0 | 30.022917 | 5 |
TATCAAC | 4635 | 0.0 | 29.732841 | 2 |
TAGACTA | 80 | 3.3819906E-6 | 29.411036 | 5 |
AACGCAG | 4740 | 0.0 | 29.357851 | 6 |
ATGCCGT | 120 | 2.3537723E-9 | 29.10474 | 44 |
GACCGAT | 155 | 1.8189894E-12 | 28.265944 | 26 |
CGCAGAG | 4900 | 0.0 | 28.193438 | 8 |
CCGTCTT | 125 | 3.3815013E-9 | 28.132874 | 47 |