EGAF00004687303 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004687303
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	851292
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2321	0.2726444040352782	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAATGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1921	0.22565700135793593	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	1897	0.2228377571972954	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1711	0.20098861495233128	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	1701	0.1998139298853977	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1572	0.18466049252195488	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1360	0.15975716910296348	No Hit
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT	1337	0.1570553934490163	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	1256	0.14754044440685452	No Hit
ACAGTACCCTGATCACCTTCGCCCAAGGGACACGACTGGAGATTAAACGA	1250	0.1468356333666944	No Hit
GGGTACTGTAAGTCTGTTGACAGTAGTAAGTTGCAAAATCTTCAGGTTGCAGACTGCTGATGGTGAGAGTGAAAT	977	0.11476673103940832	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	923	0.10842343167796714	No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG	918	0.10783608914450035	No Hit
GGTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAA	906	0.10642646706418009	No Hit
CCGCAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAATGAT	875	0.10278494335668607	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGCCG	35	0.0059414534	54.6215	70
TCGTATG	80	3.45608E-11	43.21919	40
ACCGATC	110	0.0	39.87861	27
GTATCAA	3600	0.0	38.27878	1
ATCTCGT	105	1.8189894E-11	35.91364	37
CGTATGC	100	3.619789E-10	34.667526	41
CTACGTA	40	0.002950547	33.610638	9
GCCGTCT	105	5.347829E-10	33.419632	46
TCCGAGA	135	1.3618192E-6	33.042633	70
TATCTCG	115	5.2750693E-11	32.7221	36
ATCAACG	4500	0.0	30.624825	3
TCAACGC	4515	0.0	30.52308	4
CAACGCA	4635	0.0	30.022917	5
TATCAAC	4635	0.0	29.732841	2
TAGACTA	80	3.3819906E-6	29.411036	5
AACGCAG	4740	0.0	29.357851	6
ATGCCGT	120	2.3537723E-9	29.10474	44
GACCGAT	155	1.8189894E-12	28.265944	26
CGCAGAG	4900	0.0	28.193438	8
CCGTCTT	125	3.3815013E-9	28.132874	47