FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004687348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004687348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4069
Sequences flagged as poor quality0
Sequence length20-76
%GC74

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG150637.01155074956992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG210.5160973212091423No Hit
TCATTGGAGGATTTGCTAGCGCTACCAGTG60.14745637748832638No Hit
TCATTGGAGGATTTGCTAGCGCTACCAG50.1228803145736053No Hit
CCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGT50.1228803145736053No Hit
GCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC50.1228803145736053No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT50.1228803145736053No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCCA150.002761846965.0740712
Produced by FastQC (version 0.11.5)