FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004687538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004687538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences959452
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACACAGCCGTGTCTGCGGCGGTCACAGAGTTCAGCCTCAGGGAGA32220.33581669536360337No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19920.20761851556930414No Hit
GTGTATTACTGTGCGAGACATGAGAGAAGTGGATTCACTTTTGATCTTAG16540.17239007266648046No Hit
CAGTAATACACAGCCGTGTCTGCGGCGGTCACAGAGTTCAGCCTCAGGGA12820.13361794024088752No Hit
GTCTCTGCTGGCTCCATCAGCAGGAGGACTGACTACTGGGGATGGATCCG12620.1315334169921997No Hit
GTATTACTGTGCGAGACATGAGAGAAGTGGATTCACTTTTGATCTTAGCA12610.1314291908297653No Hit
GTCACATCCTGGCTGGGATTCGTGTAGTGCTTCACGTGGCATGTCACGGA12180.12694746584508657No Hit
GTGTACAGGTCCCCGGAGGCATCCTGGCTGGGTGGGAAGTTTCTGGCGGT12090.12600943038317708No Hit
CACCTGCACTGTCTCTGCTGGCTCCATCAGCAGGAGGACTGACTACTGGG11760.1225699670228422No Hit
CTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTC11220.11694175425138516No Hit
GTGTGACCTGGAGCGAAAGCGGACAGGGCGTGACCGCCAGAAACTTCCCACCCAGCCAGGATGCCTCCGGGGAC11040.11506568332756614No Hit
GTTCAAGGACCACCTGAGCGTGACCTCTGTGGCTGCTACAGCGTGTCCAG10980.11444032635295981No Hit
AGGTCACACTGAGTGGCTCCTGGGGGAAGAAGCCCTGGACCAGGCAGGCG10770.11225157694183764No Hit
GTGCAGTGACAGTCGGGGGTGGCAGCATGAGGGAGATGGGGTAGGTGGAG10290.10724872114498693No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT10210.10641491184551183No Hit
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGT9650.10057824674918599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)