EGAF00004687959 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004687959
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382920
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT	1843	0.4813015773529719	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGC	724	0.18907343570458582	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCA	617	0.1611302621957589	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	523	0.1365820536926773	No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG	517	0.1350151467669487	No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	478	0.12483025174971274	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	477	0.12456910059542464	No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA	465	0.1214352867439674	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	463	0.12091298443539121	No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGGTAG	447	0.11673456596678158	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	446	0.11647341481249349	No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	436	0.11386190326961244	No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTT	431	0.11255614749817194	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCC	427	0.11151154288101953	No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCATTTGCCAGTGCCCCAGGTCTGACAGTAATAGTCAG	423	0.11046693826386714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	270	0.0	58.381287	70
ATCGTAT	20	0.0075185387	51.46318	39
CCAACGA	20	0.00847299	49.930782	19
GCTTTAG	20	0.008477365	49.92426	14
TCTCGTA	295	0.0	48.649956	38
CTCGTAT	305	0.0	48.36977	39
ATCTCGT	285	0.0	47.824375	37
TCGTATG	365	0.0	47.169777	40
CCGTCTT	340	0.0	46.65853	47
CGTATGC	365	0.0	46.37675	41
TTATACA	360	0.0	46.244286	2
ATGTCGT	30	6.703241E-4	45.433155	37
AACGGGG	40	6.824888E-4	45.263718	69
GCCGTCT	355	0.0	44.520782	46
CGTCTTC	360	0.0	44.200886	48
GATCTCG	310	0.0	43.850323	36
GGTATCA	575	0.0	43.429413	1
TATACAC	400	0.0	43.284653	3
CTTGAAA	400	0.0	43.097424	57
AGACCGA	385	0.0	42.443115	25