EGAF00004687960 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004687960
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382920
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3888	1.0153556878721404	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGC	647	0.16896479682440196	No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG	519	0.1355374490755249	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	505	0.1318813329154915	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	498	0.13005327483547477	No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	496	0.12953097252689857	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCA	491	0.12822521675545806	No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	457	0.11934607750966258	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	443	0.11568996134962917	No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGGTAG	413	0.10785542672098611	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	409	0.1068108221038337	No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTT	396	0.10341585709808837	No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA	393	0.10263240363522408	No Hit
GGGTCTCTCTCCCAGCTTGTGCTGACTCAATCGCCCTCTGCCTCTGCCTCCCTGGGAGCCTCGGTCAAGCTCAC	386	0.10080434555520737	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATAAA	20	0.008470104	49.935074	1
CAGGGTA	30	7.518766E-4	44.38673	1
GGTATCA	515	0.0	39.43093	1
CGTATTT	35	0.001447478	38.85363	36
ACGATTC	40	0.001646181	37.8485	64
CACGATT	40	0.0016862481	37.663708	63
GTATCAA	1305	0.0	36.98894	1
TTAGGAA	80	0.0023251835	35.268635	70
CGATTGT	140	8.143961E-7	35.268635	70
GTGGTAT	135	0.0	34.52301	1
AACGGCC	190	0.0	34.07885	37
CACCTAG	85	0.0031300208	33.194008	70
GAAAGAC	45	0.0032971504	32.85185	59
TTCGTTC	45	0.0035087469	32.437435	56
CGCGGTA	205	0.0	32.21051	43
TTAACGG	200	0.0	32.20247	35
ATCAACG	1490	0.0	32.14771	3
TCAACGC	1510	0.0	31.705341	4
TAACGGC	205	0.0	31.509346	36
CAACGCA	1520	0.0	31.496752	5