EGAF00004687978 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004687978
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	862574
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5366	0.6220915538840726	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	1971	0.22850213430963603	No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC	1164	0.1349449438540925	No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT	1138	0.13193070971302173	No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGG	1084	0.12567037726618238	No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC	1064	0.12335173561920484	No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT	1050	0.12172868646632058	No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC	892	0.10341141745519805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGC	135	0.0	44.33925	3
TAACGCC	170	0.0	35.20241	4
GTATCAA	4430	0.0	35.01752	1
TATCGAG	40	0.0026441447	34.370758	39
GGTATCA	1980	0.0	34.29795	1
CCTAACG	190	0.0	31.51334	2
ATCAACG	5325	0.0	28.789286	3
TCAACGC	5375	0.0	28.391157	4
CAACGCA	5465	0.0	27.859533	5
AACGCCA	215	0.0	27.83124	5
CGCAGAG	5515	0.0	27.787783	8
AACGCAG	5580	0.0	27.523666	6
AGAGTAC	5730	0.0	27.03051	11
ACGCAGA	5700	0.0	26.944221	7
CGGTATC	50	0.009240018	26.611267	2
GCAGAGT	5760	0.0	26.605837	9
CAGAGTA	5825	0.0	26.420023	10
GTACTAG	65	0.001066197	25.607069	1
TGTGTCG	165	1.21702695E-4	24.966984	70
CGTATTT	75	0.0014509542	24.288263	56