FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004688352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004688352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1139065
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTG25340.22246316057468185No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23550.20674851742437877No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG19860.1743535267961003No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGCTGTGTCTCATAAGT19110.1677691791074258No Hit
GCCTTGGGCTGACCTAGGACGGTCAGTTTGGTCCCTCCGCCGAATACCAAAGTGTTGCTGGTTCTATATGAGCTG18480.16223832704893926No Hit
GACCTAGGACGGTCAGTTTGGTCCCTCCGCCGAATACCAAAGTGTTGCTGGTTCTATATGAGCTGCAGTAATAAT18080.15872667494831288No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG17520.15381036200743592No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC17420.15293244898227934No Hit
GTCCTGGGCCCAGTCCGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTG17330.1521423272596384No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG15250.13388173633638117No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAG15170.13317940591625588No Hit
GATTATTACTGCAGCTCATATAGAACCAGCAACACTTTGGTATTCGGCGGAGGGACCAAACTGACCGTCCTAGGT14840.13028229293323912No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG14840.13028229293323912No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT13340.11711359755589015No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGTTTGGTCCCTC13280.11658684974079618No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT13000.1141286932703577No Hit
GAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGAT11800.10359373696847854No Hit
GCTCAGGCGTCAGGCTCAGATAGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCA11700.10271582394332193No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGATAGCTGCTGG11670.10245245003577495No Hit
CTCCTGCACTGGAACCAGCACTGACGTTGGTGGTTATGACTATGTCTCCTGGTATCAGCAGCACCCAGGCAAAGT11480.10078441528797744No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGCTGTGTCTCATAAGTGACTTCTACC11410.10016987617036781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)