FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004688502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004688502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1473464
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51620.3503309208776054No Hit
ATATTATACTACTCCTCCGAAGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGCGAACTGTGGCTGCACCAT40500.2748625008822747No Hit
GTATAATATTGCTGACAGTAATAAACTGCCACATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTC36310.24642610881568874No Hit
GTTTTATACAGCCCCATCAATAAGAACTACTTAGCTTGGTACCAGCACAA34390.23339559025534387No Hit
CTCCTAGGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCT30630.2078774914080018No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT29490.20014062101279703No Hit
GCCTAGGAGGCTGTCCTGGTTTGTGCTGGTACCAAGCTAAGTAGTTCTTATTGATGGGGCTGTATAAAACACT27890.189281855545843No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC24800.16831086473778795No Hit
GTATAAAACACTCTGGCTGGACTTGCAGTTGATGGCGGCCGTCTCGCCCAGAGACACAGCCAGGGAGTCTGGAGA24240.16451029682435403No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC23580.16003105606923548No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC20780.14102821650206587No Hit
AACCAGGACAGCCTCCTAGGCTGCTCATTTACTGGGCATCTACCCGGGAA19300.13098385844513338No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC19120.12976224733010103No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA19060.12935504362509026No Hit
GTAATAAACTGCCACATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGACCCGCTGCCA18660.12664035225835174No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG18400.12487580286997171No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT17370.11788547260062003No Hit
GTTTATTACTGTCAGCAATATTATACTACTCCTCCGAAGACGTTCGGCCA16750.11367770098217533No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTT16570.11245608986714299No Hit
GGATGGGAGGGGGTCAGGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAG15770.10702670713366597No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT15570.10566936145029672No Hit
GTAATATACAGCCGTGTCCTCGACTCTCAGATTGTTCATTTGCAGATACA15520.1053300250294544No Hit
GTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGC15090.10241173181021049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)