EGAF00004688537 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004688537
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1171301
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAGTACACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACA	3297	0.28148187357476856	No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG	2381	0.20327823505657383	No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA	1754	0.149748015241172	No Hit
GTGTACTACTGTGCGAGAGCCCACCCGTGGGATTGTAGTAGTACCAGCTG	1740	0.1485527631240817	No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC	1676	0.14308875344595454	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	1530	0.130623981367727	No Hit
AGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTC	1450	0.12379396927006807	No Hit
GGGTAGCAGTAACTATCTGATTATCCAGCTCCACTTCTGTAGGATCACAT	1400	0.11952521170903124	No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGT	1392	0.11884221049926534	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1335	0.11397582687968336	No Hit
GCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTC	1262	0.1077434408405696	No Hit
CTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTCCATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGG	1261	0.10765806568934885	No Hit
CAGTAGTACACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATA	1260	0.10757269053812812	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGT	1229	0.10492606085028529	No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGCTGTGGGCGAAGTACCGGCCTGGGGC	1226	0.10466993539662307	No Hit
GTATGTGACCAGCGCCCCAATGCCTGAGCCCCAGGCCCCAGGCCGGTACTTCGCCCACAGCATCCTGACCGTGTC	1199	0.10236480631366318	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	40	8.4371277E-7	51.5961	38
CTAACGC	40	9.2080154E-7	50.9463	3
CGCGTAT	45	1.8813917E-6	45.92873	39
ATCTCGT	240	0.0	44.359013	37
CGAGACG	405	0.0	43.632576	23
AATCTCG	290	0.0	42.57138	36
CGTATGC	270	0.0	42.262363	41
GGTATCA	1245	0.0	42.011944	1
ATCGGAT	35	0.0010951406	41.128666	61
ATGCCGT	290	0.0	40.71349	44
TGCCGTC	285	0.0	40.27434	45
CGCTCAT	450	0.0	40.087852	28
TCGTATG	260	0.0	39.814976	40
GCCGTCT	275	0.0	39.267605	46
GAGACGC	460	0.0	38.41892	24
ACGAGAC	470	0.0	38.31151	22
AATCGCG	90	1.3096724E-10	38.10401	36
CACGAGA	490	0.0	37.43793	21
CCTAACG	55	8.232659E-6	37.051857	2
ATGAATC	490	0.0	36.277504	33