Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004688669 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1144514 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATTACTGTCAGCAGTATGGTAGTTTACCTCCCACTTTCGGCGGAGGGA | 2269 | 0.19825008693646387 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGT | 2010 | 0.17562039433331528 | No Hit |
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT | 1587 | 0.1386614755258564 | No Hit |
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC | 1542 | 0.13472967565272248 | No Hit |
GTATGGTAGTTTACCTCCCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAGCGAACTGTGGCTGCACCAT | 1438 | 0.1256428492792574 | No Hit |
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGCGAAGTCTGTCCCAGACCCACTGCCA | 1416 | 0.12372063600794747 | No Hit |
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC | 1206 | 0.10537223659998916 | No Hit |
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA | 1177 | 0.10283841001508062 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 425 | 0.0 | 42.07507 | 40 |
CGTATGC | 465 | 0.0 | 41.52534 | 41 |
ATCTCCG | 600 | 0.0 | 39.72917 | 10 |
GGTATCA | 1240 | 0.0 | 39.53407 | 1 |
TATGCCG | 530 | 0.0 | 37.946613 | 43 |
ACGAGAC | 645 | 0.0 | 37.48772 | 22 |
TCTCCGA | 640 | 0.0 | 37.246098 | 11 |
ATCTCGT | 395 | 0.0 | 37.13126 | 37 |
CCCACGA | 640 | 0.0 | 36.19849 | 19 |
TATACAC | 715 | 0.0 | 36.159718 | 3 |
CTTATAC | 670 | 0.0 | 36.08262 | 1 |
ATGCCGT | 550 | 0.0 | 36.01917 | 44 |
CGAGACA | 665 | 0.0 | 35.86467 | 23 |
GTATCAA | 2785 | 0.0 | 35.204487 | 1 |
GATCTCG | 465 | 0.0 | 32.945778 | 36 |
GTATGCC | 620 | 0.0 | 31.797169 | 42 |
CCGAGCC | 740 | 0.0 | 31.75775 | 14 |
TTATACA | 775 | 0.0 | 31.627256 | 2 |
TCCGAGC | 745 | 0.0 | 31.544611 | 13 |
TCTGTCG | 295 | 0.0 | 30.728697 | 8 |