Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004688672 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 583086 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 3035 | 0.5205064090031316 | No Hit |
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC | 1299 | 0.2227801730790998 | No Hit |
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT | 1023 | 0.17544581759809016 | No Hit |
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG | 950 | 0.16292622357593906 | No Hit |
GTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCA | 924 | 0.15846719008859755 | No Hit |
CTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCG | 911 | 0.15623767334492683 | No Hit |
GGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCA | 781 | 0.13394250590821938 | No Hit |
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC | 756 | 0.12965497370885257 | No Hit |
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTC | 709 | 0.12159441317404293 | No Hit |
GAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGG | 669 | 0.11473436165505603 | No Hit |
GCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGAC | 659 | 0.1130193487753093 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT | 651 | 0.11164733847151191 | No Hit |
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC | 626 | 0.10735980627214511 | No Hit |
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC | 592 | 0.10152876248100623 | No Hit |
ATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGAC | 591 | 0.10135726119303155 | No Hit |
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGG | 589 | 0.1010142586170822 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CATGGGT | 20 | 0.0063920915 | 53.62278 | 49 |
CTAACGC | 50 | 5.0397684E-6 | 39.79307 | 3 |
GGTATCA | 1525 | 0.0 | 38.5115 | 1 |
GTATCAA | 3810 | 0.0 | 38.23196 | 1 |
TGGTACG | 80 | 0.0035776005 | 32.307487 | 70 |
AACGTCG | 55 | 2.7425928E-4 | 32.29265 | 47 |
ACGTCGT | 45 | 0.003941117 | 31.679808 | 48 |
ACGGGTA | 440 | 0.0 | 31.672594 | 16 |
TAAAACG | 45 | 0.00419455 | 31.279053 | 44 |
AATCCGA | 45 | 0.004795885 | 30.434273 | 37 |
ATCAACG | 4835 | 0.0 | 30.108856 | 3 |
TCAACGC | 4840 | 0.0 | 30.075172 | 4 |
CGCAGAG | 4805 | 0.0 | 29.951775 | 8 |
CAACGCA | 4905 | 0.0 | 29.746773 | 5 |
AACGCAG | 4925 | 0.0 | 29.625975 | 6 |
CCGCAAC | 45 | 0.005584248 | 29.50165 | 17 |
AGAGTAC | 4890 | 0.0 | 29.159883 | 11 |
ACGCAGA | 4995 | 0.0 | 29.14441 | 7 |
GCAGAGT | 4920 | 0.0 | 29.116879 | 9 |
CAGAGTA | 4930 | 0.0 | 28.990555 | 10 |