FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004688808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004688808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1138486
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTACTGTCAGCAATATGGTACCTCACCGTCCATGTTCACTTTTGGCC32440.2849398235902769No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30650.2692171884414916No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT28460.24998111527063135No Hit
GTCTATGTCTCCGGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGA24890.2186236809236126No Hit
CAGTAATACACTGCAAAATCTTCAGCCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA24230.21282650818718893No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC22760.1999146234560636No Hit
GTAATAAACAGCCGTGTCTGCGGCTGTCACAGAGGTCAGCCTCAGGGAGA20990.18436766020838202No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC20660.1814690738401702No Hit
GTTTATTACTGTGTGAGACATGGTTATTATTTTGATGTTAATGCTGTCTT19760.1735638382905016No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATTCCA17140.1505508192459108No Hit
GTGTATTACTGTCAGCAATATGGTACCTCACCGTCCATGTTCACTTTTGGCCAGGGGACCAAGCTGGAGATCAGA17010.14940895188873643No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC16400.1440509589050722No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC15310.134476840294918No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT15160.1331593010366399No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGGCTGAAGATT14650.12867966755849433No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG14540.12771347210242373No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT14120.12402436217924506No Hit
CATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCA13540.11892987704723641No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA13510.1186663691955808No Hit
CTCCTGCAGGGCCAGTCAGACTATAAGGAACAACCACTTAGCCTGGTACC13460.11822718944282144No Hit
GGATGGGAGGGGGTCAGGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAG13450.11813935349226955No Hit
GTAATACACTGCAAAATCTTCAGCCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA13350.11726099398675083No Hit
GTGTGACCTGGAGCGAAAGCGGACAGAACGTGACCGCCAGAAACTTCCCACCTAGCCAGGATGCCTCCGGGGAC13310.11690965018454334No Hit
ATATGGTACCTCACCGTCCATGTTCACTTTTGGCCAGGGGACCAAGCTGG12740.11190300100308655No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGATTTCAACTG12490.10970710223928973No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG11910.10461261710728108No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT11850.10408560140396984No Hit
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT11840.10399776545341796No Hit
GTACCATATTGCTGACAGTAATACACTGCAAAATCTTCAGCCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTC11760.10329507784900298No Hit
GTCTCCAGGCACCCTGTCTATGTCTCCGGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGACTATAAGGAA11660.10241671834348424No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTT11510.10109917908520615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)