EGAF00004689512 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004689512
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	670164
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9021	1.3460884201479042	No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1457	0.21740946992079552	No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	1110	0.1656310992533171	No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	912	0.13608609235948216	No Hit
GGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTA	892	0.13310174822879176	No Hit
GGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCCGGGGAGCGGGGGCTTGCCGGCCGTCGCACTCATTTA	890	0.13280331381572272	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	866	0.12922210085889424	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	689	0.10281065530228421	No Hit
CATTTACCCGGAGACAGGGAGAGGCTCTTCTGCGTGTAGTGGTTGTGCAG	681	0.10161691765000805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCGTA	15	0.002272259	69.6257	42
CTAACGC	50	1.4770194E-9	53.475708	3
TCGTGCA	40	0.0066012153	53.182938	70
GTCGTAT	20	0.00703864	52.333237	43
TAACGCC	65	1.5057594E-8	41.132088	4
AGGCTCG	175	3.0031515E-9	36.4683	70
GTATCAA	4620	0.0	33.34748	1
CTTGCGG	95	2.1933738E-7	30.332764	55
CGCCATG	100	1.976332E-8	30.073349	7
CCTAACG	90	2.6303132E-7	29.710943	2
CCTTGCG	100	3.555051E-7	28.70526	54
ATCAACG	5355	0.0	28.647701	3
TCAACGC	5450	0.0	28.146235	4
AGGTACG	60	6.5252907E-4	27.85193	3
AACGCAG	5535	0.0	27.8306	6
CAACGCA	5555	0.0	27.610094	5
GACAGGT	135	4.4201443E-10	27.230967	1
TATCAAC	5700	0.0	26.79849	2
CCGCAGT	50	0.009004287	26.751835	17
GTACGGC	50	0.009037135	26.731865	14