EGAF00004691316 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691316
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39925087
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG	128105	0.32086342103650267	TruSeq Adapter, Index 22 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTACG	13925	43.364986	33
CGTACGT	13970	43.176987	34
GATCGGA	14320	42.81766	1
ACCGTAC	14650	41.280266	32
ATCGGAA	15015	40.933	2
CTCGTAT	14670	40.838787	44
GTACGTA	14920	40.442356	35
TCTCGTA	15025	39.903828	43
TCGTATG	15260	39.407013	45
CGTAATC	15295	39.334007	38
TCGGAAG	15700	39.04676	3
GTCACCG	15575	38.94341	29
CGTCTGA	15810	38.578583	16
CACCGTA	15790	38.42759	31
TACGTAA	15745	38.395683	36
ACACGTC	15965	38.373146	13
ACGTAAT	15850	38.09874	37
ATCTCGT	15755	38.042194	42
CGGAAGA	16400	37.46244	4
ACGTCTG	16475	37.103325	15