EGAF00004691318 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691318
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16812367
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	293190	1.7438948364617548	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	31910	43.5327	44
TCGTATG	32110	43.422718	45
CGTCTGA	32930	42.797432	16
CACACGT	33015	42.75539	12
ACGTCTG	32995	42.679028	15
TCTCGTA	32590	42.638184	43
ACACGTC	33070	42.616253	13
CACGTCT	33055	42.608364	14
ATCGGAA	33485	42.256058	2
GTCCCGA	33135	42.174286	36
TCGGAAG	33560	42.141514	3
CACCCGT	33150	42.1268	31
ACCCGTC	33190	42.123486	32
GCACACG	33910	41.68001	11
TCCCGAT	33875	41.246098	37
GATCGGA	34270	41.24588	1
AGTCACC	33995	41.125755	28
CGGAAGA	34845	40.742397	4
CAGTCAC	34530	40.501595	27
TCTGAAC	34735	40.476307	18