FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004691379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004691379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13307894
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATCGCAATCTCGTATGC1833351.377640970088881TruSeq Adapter, Index 14 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATCGCAATCTCGTATG495900.3726359708004888TruSeq Adapter, Index 14 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)