Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004691381 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23912430 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC | 91821 | 0.3839885783251639 | TruSeq Adapter, Index 11 (100% over 51bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10215 | 0.0 | 42.595814 | 1 |
ACGGCTA | 10215 | 0.0 | 41.84414 | 32 |
ATCGGAA | 10465 | 0.0 | 41.587086 | 2 |
CTCGTAT | 10230 | 0.0 | 41.45824 | 42 |
CGGCTAC | 10360 | 0.0 | 41.288227 | 33 |
CGTATGC | 10355 | 0.0 | 41.088047 | 44 |
TCTCGTA | 10295 | 0.0 | 41.06529 | 41 |
TCGTATG | 10510 | 0.0 | 40.503674 | 43 |
ACACGTC | 10770 | 0.0 | 40.117 | 13 |
TCGGAAG | 10895 | 0.0 | 39.99029 | 3 |
ATCTCGT | 10740 | 0.0 | 39.552437 | 40 |
CGTCTGA | 10990 | 0.0 | 39.416256 | 16 |
GTCACGG | 10855 | 0.0 | 39.253277 | 29 |
AGTCACG | 10980 | 0.0 | 38.812572 | 28 |
TCACGGC | 11155 | 0.0 | 38.295002 | 30 |
CGGAAGA | 11390 | 0.0 | 38.252346 | 4 |
ACGTCTG | 11455 | 0.0 | 37.737667 | 15 |
CATCTCG | 11325 | 0.0 | 37.50917 | 39 |
CACGGCT | 11535 | 0.0 | 37.15107 | 31 |
CACGTCT | 11985 | 0.0 | 36.1439 | 14 |