EGAF00004691385 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691385
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22854669
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCC	334767	1.4647641582558033	TruSeq Adapter, Index 3 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	35210	44.04787	1
CTCGTAT	35155	43.680737	42
ATCGGAA	35535	43.667885	2
TCTCGTA	35265	43.53144	41
CGTATGC	35470	43.451405	44
ACACGTC	35735	43.410896	13
TCGTATG	35580	43.348682	43
TCGGAAG	35945	43.20109	3
CGTCTGA	35935	43.12546	16
ACGTCTG	36290	42.77179	15
ATCTCGT	36005	42.668182	40
CGGAAGA	36535	42.57734	4
CACGTCT	36550	42.467537	14
CATCTCG	36600	41.943798	39
GTATGCC	36840	41.87829	45
GCACACG	37145	41.847843	11
CACACGT	37240	41.70484	12
CTTAGGC	38035	40.555294	33
ACTTAGG	39215	39.415283	32
AGAGCAC	39955	38.972294	8