EGAF00004691465 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691465
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16988035
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTT	38389	0.22597669477370397	Illumina Single End PCR Primer 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGGCG	4535	42.2797	6
CACGACG	4500	40.648342	40
ACGACGC	4550	40.49835	41
ATACGGC	4770	40.43264	5
GATACGG	4890	39.3944	4
TGATACG	4945	38.956245	3
CGACGCT	4645	38.895077	42
TACACGA	4765	38.671036	38
ACACGAC	4770	38.44183	39
GCGACCA	5030	38.15451	10
ACGGCGA	5090	37.882565	7
CGACCAC	5145	37.389145	11
CTACACG	5070	36.34467	37
ACGCTCT	5315	34.838654	44
CGGCGAC	5555	34.630363	8
GATCGGA	2150	34.134678	1
CGTATGC	2015	33.60905	44
GACGCTC	5485	33.553783	43
ACCGAGA	5805	33.331974	16
GGCGACC	5845	33.026882	9