EGAF00004691472 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691472
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21969719
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	72316	0.3291621526884345	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCCG	8130	42.437263	35
GATCGGA	8375	42.200348	1
CCCGATC	8345	41.11168	38
GTCCCGA	8450	40.775787	36
ATCGGAA	8710	40.654373	2
TCTCGTA	8490	40.354263	43
CTCGTAT	8520	40.29148	44
TCCCGAT	8535	40.290604	37
CCGATCT	8535	40.090908	39
ACCCGTC	8725	39.661396	32
TCGGAAG	8945	39.632828	3
TCGTATG	8680	39.486042	45
ACACGTC	9010	39.38393	13
ATCTCGT	8810	38.888412	42
CACCCGT	8875	38.844227	31
CGTCTGA	9110	38.778828	16
TCACCCG	8950	38.41812	30
CGGAAGA	9275	38.343975	4
CCGTCCC	9225	37.544323	34
ACGTCTG	9530	37.164173	15