EGAF00004691493 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691493
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	576503
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1100	0.19080559858318172	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGT	1002	0.17380655434577097	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	912	0.1581951871889652	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	896	0.15541983302775528	No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	731	0.12679899324027802	No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG	712	0.12350326017384124	No Hit
GAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGAT	624	0.10823881228718671	No Hit
CCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTAC	618	0.10719805447673299	No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA	582	0.10095350761401067	No Hit
ATCTCACCCCGTTGACACGGTTAGTTTGCATGCACACACAGAGCGGCCAG	579	0.10043312870878383	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAACC	20	0.0050207805	56.996716	63
AGGGGGG	265	0.0	50.027737	70
GTCGTAT	30	6.416273E-4	45.84232	39
CGTATGC	210	0.0	42.993664	41
TGCCGTC	210	0.0	41.915607	45
GACCGGA	80	6.325638E-5	41.429222	70
GCCGTCT	205	0.0	41.353867	46
TCTCGTA	175	0.0	41.08056	38
AGACCGG	55	6.9340065E-5	40.794575	69
TCCGAGA	115	2.8453724E-7	40.348457	70
TCGTATG	215	0.0	40.195904	40
GGTATCA	1405	0.0	40.081436	1
GTATCAA	3670	0.0	39.80551	1
GTATGCC	255	0.0	36.929527	42
ATGCCGT	240	0.0	36.561543	44
CGAGACA	265	0.0	36.27641	23
CCGTCTT	235	0.0	36.22544	47
TATACAC	280	0.0	35.486122	3
ATCTCGT	205	0.0	34.88737	37
ATGTCGT	40	0.0027650867	34.05672	37